vis3d Module Reference

Output 3D arrays for 3D visialization. More...

Data Types
interface	get_field_func
interface	coordf
type	diag3d_parameters

Functions/Subroutines
subroutine, public	init3ddiagnostics (parameters)
subroutine	create_mesh_pixie ()
subroutine	create_mesh_xdmf ()
subroutine, public	get3dmeshgrid (sgrid_ptr, chigrid_ptr, phigrid_ptr)
subroutine, public	get3dmeshinfo (zdsgrid, zdchigrid, zdphigrid, zsmin, zchimin, zphimin, zsbin, zchibin, zphibin, zlocalgrid)
subroutine, public	write3d (out_field, ztime, field_array_3d, field_function_ptr, filename, lclose_file, filename_suffix)
subroutine	get_3d_field_pixie (get_field)
subroutine	get_3d_field_xdmf (get_field)
subroutine	write_pixie (file_3d, ztime, fieldname, ljoinfields, ljoinsteps, lfclose)
subroutine	write_pixie_grid ()
subroutine	write_manyfiles_h5 (file_3d, fieldname)
subroutine	write_manyfiles_xmf (filename, fieldname)
subroutine	write_onefile_h5 (file_3d, ztime, fieldname)
subroutine	write_onefile_xmf (filename, ztime, dataname, fieldname)
subroutine	set_3d_parameters (param3d)
subroutine	write_3d_parameters ()
subroutine	set_3d_grid ()
subroutine	check_if_local (drank)
subroutine, public	checkout3dfile (out_field)

Variables
real(kind=r8), parameter	pi = 3.141592653589793238462643383279502884197_r8
real(kind=r8), parameter	phi_up_default = 6.283185307179586476925286766559005768394_r8
integer, parameter	fid_xmf = 30
logical, parameter	use_h5links = .false.
character(len=2), save	mesh_type
character, save	data_type
character(len=16)	output_format
character(len=4)	output_format_type
integer, dimension(3), target, save	mesh_size
real(kind=r8), dimension(2), target, save	slim
real(kind=r8), dimension(2), target, save	chilim
real(kind=r8), dimension(2), target, save	philim
real(kind=r8), dimension(:), allocatable, target, save	sgrid_loc
real(kind=r8), dimension(:), allocatable, target, save	chigrid_loc
real(kind=r8), dimension(:), allocatable, target, save	phigrid_loc
real(kind=r8), target, save	dsgrid
real(kind=r8), target, save	dchigrid
real(kind=r8), target, save	dphigrid
real(kind=r8), dimension(:), pointer, save	field_out_ptr
real(kind=r8), dimension(:), allocatable, target, save	field_out
real(kind=r8), dimension(:,:,:), pointer, save	field_out_3d_ptr
real(kind=r8), dimension(:,:,:), allocatable, target, save	field_out_3d
real(kind=r8), dimension(:), allocatable, save	xmesh_loc
real(kind=r8), dimension(:), allocatable, save	zmesh_loc
real(kind=r8), dimension(:), allocatable, save	ymesh_loc
real(kind=r8), dimension(:,:,:), allocatable, save	xmesh_loc_3d
real(kind=r8), dimension(:,:,:), allocatable, save	zmesh_loc_3d
real(kind=r8), dimension(:,:,:), allocatable, save	ymesh_loc_3d
logical, save	local_grid
logical, save	forcelocal = .false.
integer, target, save	nphip
integer, save	pshift
integer, save	me_loc
integer, save	comm_loc
integer, save	nvp_loc
logical, save	lverbose
logical, save	me_active = .true.
procedure(coordf), pointer, save	get_coords

Detailed Description

Output 3D arrays for 3D visialization.

HDF5 based formats: PIXIE and XDMF

Author

P. Angelino

T. M. Tran

Function/Subroutine Documentation

check_if_local()

subroutine vis3d::check_if_local ( integer, intent(out) drank )

private

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checkout3dfile()

subroutine, public vis3d::checkout3dfile

(

character(*), intent(in)

out_field

)

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create_mesh_pixie()

subroutine vis3d::create_mesh_pixie

private

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create_mesh_xdmf()

subroutine vis3d::create_mesh_xdmf

private

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get3dmeshgrid()

subroutine, public vis3d::get3dmeshgrid	(	real(kind=r8), dimension(:), intent(out), pointer	sgrid_ptr,
		real(kind=r8), dimension(:), intent(out), pointer	chigrid_ptr,
		real(kind=r8), dimension(:), intent(out), pointer	phigrid_ptr )

get3dmeshinfo()

subroutine, public vis3d::get3dmeshinfo	(	real(kind=r8), intent(out), optional	zdsgrid,
		real(kind=r8), intent(out), optional	zdchigrid,
		real(kind=r8), intent(out), optional	zdphigrid,
		real(kind=r8), intent(out), optional	zsmin,
		real(kind=r8), intent(out), optional	zchimin,
		real(kind=r8), intent(out), optional	zphimin,
		integer, intent(out), optional	zsbin,
		integer, intent(out), optional	zchibin,
		integer, intent(out), optional	zphibin,
		logical, intent(out), optional	zlocalgrid )

get_3d_field_pixie()

subroutine vis3d::get_3d_field_pixie ( procedure(get_field_func), optional, pointer get_field )

private

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get_3d_field_xdmf()

subroutine vis3d::get_3d_field_xdmf ( procedure(get_field_func), optional, pointer get_field )

private

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init3ddiagnostics()

subroutine, public vis3d::init3ddiagnostics

(

type(diag3d_parameters), intent(in)

parameters

)

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set_3d_grid()

subroutine vis3d::set_3d_grid

private

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set_3d_parameters()

subroutine vis3d::set_3d_parameters ( type(diag3d_parameters), intent(in) param3d )

private

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write3d()

subroutine, public vis3d::write3d	(	character(*), intent(in)	out_field,
		integer, intent(in)	ztime,
		real(kind=r8), dimension(:,:,:), intent(in), optional, target	field_array_3d,
		procedure(get_field_func), optional, pointer	field_function_ptr,
		character(len=128), intent(out), optional	filename,
		logical, intent(in), optional	lclose_file,
		character(len=128), intent(in), optional	filename_suffix )

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write_3d_parameters()

subroutine vis3d::write_3d_parameters

private

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write_manyfiles_h5()

subroutine vis3d::write_manyfiles_h5 ( character(*), intent(in) file_3d, character(*), intent(in) fieldname )

private

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write_manyfiles_xmf()

subroutine vis3d::write_manyfiles_xmf ( character(*), intent(in) filename, character(*), intent(in) fieldname )

private

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write_onefile_h5()

subroutine vis3d::write_onefile_h5 ( character(*), intent(in) file_3d, integer, intent(in) ztime, character(*), intent(in) fieldname )

private

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write_onefile_xmf()

subroutine vis3d::write_onefile_xmf ( character(*), intent(in) filename, integer, intent(in) ztime, character(*), intent(in) dataname, character(*), intent(in) fieldname )

private

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write_pixie()

subroutine vis3d::write_pixie ( character(*), intent(in) file_3d, integer, intent(in), optional ztime, character(*), intent(in), optional fieldname, logical, intent(in), optional ljoinfields, logical, intent(in), optional ljoinsteps, logical, intent(in), optional lfclose )

private

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write_pixie_grid()

subroutine vis3d::write_pixie_grid

private

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Variable Documentation

chigrid_loc

real(kind=r8), dimension(:), allocatable, target, save vis3d::chigrid_loc

private

chilim

real(kind=r8), dimension(2), target, save vis3d::chilim

private

comm_loc

integer, save vis3d::comm_loc

private

data_type

character, save vis3d::data_type

private

dchigrid

real(kind=r8), target, save vis3d::dchigrid

private

dphigrid

real(kind=r8), target, save vis3d::dphigrid

private

dsgrid

real(kind=r8), target, save vis3d::dsgrid

private

fid_xmf

integer, parameter vis3d::fid_xmf = 30

private

field_out

real(kind=r8), dimension(:), allocatable, target, save vis3d::field_out

private

field_out_3d

real(kind=r8), dimension(:,:,:), allocatable, target, save vis3d::field_out_3d

private

field_out_3d_ptr

real(kind=r8), dimension(:,:,:), pointer, save vis3d::field_out_3d_ptr

private

field_out_ptr

real(kind=r8), dimension(:), pointer, save vis3d::field_out_ptr

private

forcelocal

logical, save vis3d::forcelocal = .false.

private

get_coords

procedure(coordf), pointer, save vis3d::get_coords

private

local_grid

logical, save vis3d::local_grid

private

lverbose

logical, save vis3d::lverbose

private

me_active

logical, save vis3d::me_active = .true.

private

me_loc

integer, save vis3d::me_loc

private

mesh_size

integer, dimension(3), target, save vis3d::mesh_size

private

mesh_type

character(len=2), save vis3d::mesh_type

nphip

integer, target, save vis3d::nphip

private

nvp_loc

integer, save vis3d::nvp_loc

private

output_format

character(len=16) vis3d::output_format

private

output_format_type

character(len=4) vis3d::output_format_type

private

phi_up_default

real(kind=r8), parameter vis3d::phi_up_default = 6.283185307179586476925286766559005768394_r8

private

phigrid_loc

real(kind=r8), dimension(:), allocatable, target, save vis3d::phigrid_loc

private

philim

real(kind=r8), dimension(2), target, save vis3d::philim

private

pi

real(kind=r8), parameter vis3d::pi = 3.141592653589793238462643383279502884197_r8

private

pshift

integer, save vis3d::pshift

private

sgrid_loc

real(kind=r8), dimension(:), allocatable, target, save vis3d::sgrid_loc

private

slim

real(kind=r8), dimension(2), target, save vis3d::slim

private

use_h5links

logical, parameter vis3d::use_h5links = .false.

private

xmesh_loc

real(kind=r8), dimension(:), allocatable, save vis3d::xmesh_loc

private

xmesh_loc_3d

real(kind=r8), dimension(:,:,:), allocatable, save vis3d::xmesh_loc_3d

private

ymesh_loc

real(kind=r8), dimension(:), allocatable, save vis3d::ymesh_loc

private

ymesh_loc_3d

real(kind=r8), dimension(:,:,:), allocatable, save vis3d::ymesh_loc_3d

private

zmesh_loc

real(kind=r8), dimension(:), allocatable, save vis3d::zmesh_loc

private

zmesh_loc_3d

real(kind=r8), dimension(:,:,:), allocatable, save vis3d::zmesh_loc_3d

private