Data Types
interface	fill_buf_pic
interface	fill_buf

Functions/Subroutines
subroutine, public	diagnose (step, step_tot, time)
subroutine	fill_buf_pic_array (fieldin, isp, ioffset)
subroutine	fill_buf_pic_scalar (fieldin, isp, ioffset)
subroutine	fill_buf_array (fieldin, ioffset)
subroutine	fill_buf_scalar (fieldin, ioffset)
subroutine, public	initialize_diagnostics
subroutine	initialize_phasespace_diags
	Initialize phase space diagnostics.
subroutine	initialize_source_3d_diags
	Initialize source 3d diagnostics.
subroutine, public	velocity_space_diag_init
subroutine	write_output (step, time)
subroutine	createg_3d (name, description, coord1, coord1_name, coord2, coord2_name, coord3, coord3_name)
subroutine	createg_3dz (name, description, coord1, coord1_name, coord2, coord2_name, coord3, coord3_name, mmin_f)
subroutine	createg_2d (name, description, coord1, coord1_name, coord2, coord2_name)
subroutine	createg_1d (name, description, coord1, coord1_name)
subroutine	createg_2dms (name, description, coord1, coord1_name, coord2, coord2_name, isp, fresid_file)
subroutine	createg_3dms (name, description, coord1, coord1_name, coord2, coord2_name, coord3, coord3_name, isp)
subroutine	createg_3dzms (name, description, coord1, coord1_name, coord2, coord2_name, coord3, coord3_name, isp, mmin_f)
subroutine	createg_1dms (name, description, coord1, coord1_name, isp)
subroutine, public	flush0d
subroutine	get_epot (x, y, z, zpot)
subroutine	get_misc_pot (x, y, z, zpot)
subroutine	get_ebpot (x, z, zpot)
subroutine	get_nebpot (x, zpot)
subroutine	get_apot (x, y, z, zpot)
subroutine	get_debug_field (x, y, z, zpot)
subroutine	get_coords (st, chit, phit, xt, yt, zt)
subroutine	get_3d_parameters ()
subroutine	add_jacobian_3d_out (filename)
subroutine	add_phibar_3d_out (filename)
subroutine	diag3d_on_fluid_moments (isp)
subroutine	diag3d_spectrum (field, spectrum_out, nmax)
subroutine	put3d_h5s (time, diag_select, field_select, isp)
subroutine	rhs_f_serialize (rhs_f_ptr)
subroutine	mmin_f_serialize
subroutine	put3d_dens (time, do_moments)

Variables
type(diag3d_parameters)	param3d
integer	nr
integer	nz
integer	nph
integer	nc
integer	nr_eq
integer	nz_eq
character(len=256)	hpath
integer, save	line_count = 0
real(kind=r8), dimension(:), allocatable, save	flux_bin_theta
real(kind=r8), dimension(:), allocatable, save	flux_bin_psi
real(kind=r8), dimension(:), allocatable, save	bin_sampling_psi
real(kind=r8), dimension(:,:), allocatable, save	bin_sampling_v2
real(kind=r8), dimension(:), allocatable, save	phasespace_psi
real(kind=r8), dimension(:, :), allocatable, save	phasespace_vpar
real(kind=r8), dimension(:, :), allocatable, save	phasespace_vperp
real(kind=r8), dimension(:), allocatable, save	source_3d_major_radius
real(kind=r8), dimension(:, :), allocatable, save	source_3d_vpar
real(kind=r8), dimension(:, :), allocatable, save	source_3d_vperp
real(kind=r8), dimension(:,:), allocatable, save	buf
real(kind=r8), dimension(:,:,:), allocatable, save	buf_pic
integer, save	ibuf =0
real(kind=r8), save	phi0 = 0.0_r8
real(kind=r8), dimension(1:nbin_xi), save	flux_bin_xi = 0.0_r8
real(kind=r8), dimension(:,:), allocatable, save	flux_bin_v
real(kind=r8), dimension(:), allocatable, save	rarr_eq
real(kind=r8), dimension(:), allocatable, save	zarr_eq
real(kind=r8), dimension(:), allocatable, save	sarr
real(kind=r8), dimension(:), allocatable, save	phiarr
real(kind=r8), dimension(:), allocatable, save	chiarr
real(kind=r8), dimension(:,:,:), allocatable, save	potsp
real(kind=r8), dimension(:,:,:), allocatable, save	potsc
real(kind=r8), dimension(:,:), allocatable, save	srz
real(kind=r8), dimension(:,:), allocatable, save	rsc
real(kind=r8), dimension(:,:), allocatable, save	zsc
real(kind=r8), dimension(:,:), allocatable, save	psirz
real(kind=r8), dimension(:,:), allocatable, save	isrz
real(kind=r8), dimension(:,:), allocatable, save	hisrz
real(kind=r8), dimension(:,:), allocatable, save	hisrz_an
real(kind=r8), dimension(:,:), allocatable, save	isrz_an
real(kind=r8), dimension(:,:), allocatable, save	iscp
real(kind=r8), dimension(:,:), allocatable, save	hiscp
real(kind=r8), dimension(:,:), allocatable, save	iscp_an
real(kind=r8), dimension(:,:), allocatable, save	hiscp_an
real(kind=r8), dimension(:,:), allocatable, save	potcp
integer	ierr
integer, parameter	nhistarr =16
integer, save	write3dsize
integer, save	pot_misc_isp_saved
integer, save	get_pot_disp_saved
logical, save	nl_sympl_apar = .false.

Function/Subroutine Documentation

◆ add_jacobian_3d_out()

subroutine diagnostics_mod::add_jacobian_3d_out ( character(len=128), intent(in) filename )

private

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◆ add_phibar_3d_out()

subroutine diagnostics_mod::add_phibar_3d_out ( character(len=128), intent(in) filename )

private

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◆ createg_1d()

subroutine diagnostics_mod::createg_1d	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real(kind=r8), dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name )

private

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◆ createg_1dms()

subroutine diagnostics_mod::createg_1dms	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real(kind=r8), dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		integer, intent(in)	isp )

private

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◆ createg_2d()

subroutine diagnostics_mod::createg_2d	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real(kind=r8), dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real(kind=r8), dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name )

private

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◆ createg_2dms()

subroutine diagnostics_mod::createg_2dms	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real(kind=r8), dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real(kind=r8), dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name,
		integer, intent(in)	isp,
		integer, intent(in), optional	fresid_file )

private

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◆ createg_3d()

subroutine diagnostics_mod::createg_3d	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real(kind=r8), dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real(kind=r8), dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name,
		real(kind=r8), dimension(:), intent(in)	coord3,
		character(len=*), intent(in)	coord3_name )

private

◆ createg_3dms()

subroutine diagnostics_mod::createg_3dms	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real(kind=r8), dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real(kind=r8), dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name,
		real(kind=r8), dimension(:), intent(in)	coord3,
		character(len=*), intent(in)	coord3_name,
		integer, intent(in)	isp )

private

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◆ createg_3dz()

subroutine diagnostics_mod::createg_3dz	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real(kind=r8), dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real(kind=r8), dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name,
		real(kind=r8), dimension(:), intent(in)	coord3,
		character(len=*), intent(in)	coord3_name,
		integer, dimension(:,:), intent(in), optional	mmin_f )

private

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◆ createg_3dzms()

subroutine diagnostics_mod::createg_3dzms	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real(kind=r8), dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real(kind=r8), dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name,
		real(kind=r8), dimension(:), intent(in)	coord3,
		character(len=*), intent(in)	coord3_name,
		integer, intent(in)	isp,
		integer, dimension(:,:), intent(in), optional	mmin_f )

private

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◆ diag3d_on_fluid_moments()

subroutine diagnostics_mod::diag3d_on_fluid_moments ( integer, intent(in) isp )

private

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◆ diag3d_spectrum()

subroutine diagnostics_mod::diag3d_spectrum	(	real(kind=r8), dimension(:,:,:), intent(in)	field,
		real(kind=r8), dimension(:,:), intent(out)	spectrum_out,
		integer, intent(in)	nmax )

private

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◆ diagnose()

subroutine, public diagnostics_mod::diagnose	(	integer, intent(in)	step,
		integer, intent(in)	step_tot,
		real(kind=r8), intent(in)	time )

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◆ fill_buf_array()

subroutine diagnostics_mod::fill_buf_array	(	type(diag0d), intent(in)	fieldin,
		integer, intent(inout)	ioffset )

private

◆ fill_buf_pic_array()

subroutine diagnostics_mod::fill_buf_pic_array	(	type(diag0d), intent(in)	fieldin,
		integer, intent(in)	isp,
		integer, intent(inout)	ioffset )

private

◆ fill_buf_pic_scalar()

subroutine diagnostics_mod::fill_buf_pic_scalar	(	real(kind=r8), intent(in)	fieldin,
		integer, intent(in)	isp,
		integer, intent(inout)	ioffset )

private

◆ fill_buf_scalar()

subroutine diagnostics_mod::fill_buf_scalar	(	real(kind=r8), intent(in)	fieldin,
		integer, intent(inout)	ioffset )

private

◆ flush0d()

subroutine, public diagnostics_mod::flush0d

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◆ get_3d_parameters()

subroutine diagnostics_mod::get_3d_parameters

private

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◆ get_apot()

subroutine diagnostics_mod::get_apot	(	real(kind=r8), intent(in)	x,
		real(kind=r8), intent(in)	y,
		real(kind=r8), intent(in)	z,
		real(kind=r8), intent(inout)	zpot )

private

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◆ get_coords()

subroutine diagnostics_mod::get_coords	(	real(kind=r8), intent(in)	st,
		real(kind=r8), intent(in)	chit,
		real(kind=r8), intent(inout)	phit,
		real(kind=r8), intent(out)	xt,
		real(kind=r8), intent(out)	yt,
		real(kind=r8), intent(out)	zt )

private

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◆ get_debug_field()

subroutine diagnostics_mod::get_debug_field	(	real(kind=r8), intent(in)	x,
		real(kind=r8), intent(in)	y,
		real(kind=r8), intent(in)	z,
		real(kind=r8), intent(inout)	zpot )

private

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◆ get_ebpot()

subroutine diagnostics_mod::get_ebpot	(	real(kind=r8), intent(in)	x,
		real(kind=r8), intent(in)	z,
		real(kind=r8), intent(inout)	zpot )

private

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◆ get_epot()

subroutine diagnostics_mod::get_epot	(	real(kind=r8), intent(in)	x,
		real(kind=r8), intent(in)	y,
		real(kind=r8), intent(in)	z,
		real(kind=r8), intent(inout)	zpot )

private

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◆ get_misc_pot()

subroutine diagnostics_mod::get_misc_pot	(	real(kind=r8), intent(in)	x,
		real(kind=r8), intent(in)	y,
		real(kind=r8), intent(in)	z,
		real(kind=r8), intent(inout)	zpot )

private

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◆ get_nebpot()

subroutine diagnostics_mod::get_nebpot	(	real(kind=r8), intent(in)	x,
		real(kind=r8), intent(inout)	zpot )

private

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◆ initialize_diagnostics()

subroutine, public diagnostics_mod::initialize_diagnostics

Note: Here we already include the kapv parameter as we want to check the loading sampling with limit kapv*vth

Bug: Not clear why this should only happen on me_world==0. Do the others not use these diagnostics? - ALS

Bug

Todo: The subroutine velocity_space_diag_init should probably be removed. path_vel1d, path_vel2d, path_vel3d, and path_vel3d_theta are all never assigned, despite being allocated and written. - ALS

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◆ initialize_phasespace_diags()

subroutine diagnostics_mod::initialize_phasespace_diags

private

Initialize phase space diagnostics.

Note that this routine must be run after vthmax2 has been initialized

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◆ initialize_source_3d_diags()

subroutine diagnostics_mod::initialize_source_3d_diags

private

Initialize source 3d diagnostics.

Note that this routine must be run after vthmax2 has been initialized

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◆ mmin_f_serialize()

subroutine diagnostics_mod::mmin_f_serialize

private

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◆ put3d_dens()

subroutine diagnostics_mod::put3d_dens	(	real(kind=r8), intent(in)	time,
		logical, intent(in), optional	do_moments )

private

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◆ put3d_h5s()

subroutine diagnostics_mod::put3d_h5s	(	real(kind=r8), intent(in)	time,
		integer, intent(in)	diag_select,
		integer, intent(in)	field_select,
		integer, intent(in), optional	isp )

private

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◆ rhs_f_serialize()

subroutine diagnostics_mod::rhs_f_serialize ( complex(kind=r8), dimension(:,:), intent(in), allocatable rhs_f_ptr )

private

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◆ velocity_space_diag_init()

subroutine, public diagnostics_mod::velocity_space_diag_init

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◆ write_output()

subroutine diagnostics_mod::write_output	(	integer, intent(in)	step,
		real(kind=r8), intent(in)	time )

private

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Variable Documentation

◆ bin_sampling_psi

real(kind=r8), dimension(:), allocatable, save diagnostics_mod::bin_sampling_psi

private

◆ bin_sampling_v2

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::bin_sampling_v2

private

◆ buf

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::buf

private

◆ buf_pic

real(kind=r8), dimension(:,:,:), allocatable, save diagnostics_mod::buf_pic

private

◆ chiarr

real(kind=r8), dimension(:), allocatable, save diagnostics_mod::chiarr

private

◆ flux_bin_psi

real(kind=r8), dimension(:), allocatable, save diagnostics_mod::flux_bin_psi

private

◆ flux_bin_theta

real(kind=r8), dimension(:), allocatable, save diagnostics_mod::flux_bin_theta

private

◆ flux_bin_v

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::flux_bin_v

private

◆ flux_bin_xi

real(kind=r8), dimension(1:nbin_xi ), save diagnostics_mod::flux_bin_xi = 0.0_r8

private

◆ get_pot_disp_saved

integer, save diagnostics_mod::get_pot_disp_saved

private

◆ hiscp

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::hiscp

private

◆ hiscp_an

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::hiscp_an

private

◆ hisrz

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::hisrz

private

◆ hisrz_an

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::hisrz_an

private

◆ hpath

character(len=256) diagnostics_mod::hpath

private

◆ ibuf

integer, save diagnostics_mod::ibuf =0

private

◆ ierr

integer diagnostics_mod::ierr

private

◆ iscp

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::iscp

private

◆ iscp_an

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::iscp_an

private

◆ isrz

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::isrz

private

◆ isrz_an

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::isrz_an

private

◆ line_count

integer, save diagnostics_mod::line_count = 0

private

◆ nc

integer diagnostics_mod::nc

private

◆ nhistarr

integer, parameter diagnostics_mod::nhistarr =16

private

◆ nl_sympl_apar

logical, save diagnostics_mod::nl_sympl_apar = .false.

private

◆ nph

integer diagnostics_mod::nph

private

◆ nr

integer diagnostics_mod::nr

private

◆ nr_eq

integer diagnostics_mod::nr_eq

private

◆ nz

integer diagnostics_mod::nz

private

◆ nz_eq

integer diagnostics_mod::nz_eq

private

◆ param3d

type(diag3d_parameters) diagnostics_mod::param3d

private

◆ phasespace_psi

real(kind=r8), dimension(:), allocatable, save diagnostics_mod::phasespace_psi

private

◆ phasespace_vpar

real(kind=r8), dimension(:, :), allocatable, save diagnostics_mod::phasespace_vpar

private

◆ phasespace_vperp

real(kind=r8), dimension(:, :), allocatable, save diagnostics_mod::phasespace_vperp

private

◆ phi0

real(kind=r8), save diagnostics_mod::phi0 = 0.0_r8

private

◆ phiarr

real(kind=r8), dimension(:), allocatable, save diagnostics_mod::phiarr

private

◆ pot_misc_isp_saved

integer, save diagnostics_mod::pot_misc_isp_saved

private

◆ potcp

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::potcp

private

◆ potsc

real(kind=r8), dimension(:,:,:), allocatable, save diagnostics_mod::potsc

private

◆ potsp

real(kind=r8), dimension(:,:,:), allocatable, save diagnostics_mod::potsp

private

◆ psirz

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::psirz

private

◆ rarr_eq

real(kind=r8), dimension(:), allocatable, save diagnostics_mod::rarr_eq

private

◆ rsc

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::rsc

private

◆ sarr

real(kind=r8), dimension(:), allocatable, save diagnostics_mod::sarr

private

◆ source_3d_major_radius

real(kind=r8), dimension(:), allocatable, save diagnostics_mod::source_3d_major_radius

private

◆ source_3d_vpar

real(kind=r8), dimension(:, :), allocatable, save diagnostics_mod::source_3d_vpar

private

◆ source_3d_vperp

real(kind=r8), dimension(:, :), allocatable, save diagnostics_mod::source_3d_vperp

private

◆ srz

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::srz

private

◆ write3dsize

integer, save diagnostics_mod::write3dsize

private

◆ zarr_eq

real(kind=r8), dimension(:), allocatable, save diagnostics_mod::zarr_eq

private

◆ zsc

real(kind=r8), dimension(:,:), allocatable, save diagnostics_mod::zsc

private

Data Types

Functions/Subroutines

Variables

Function/Subroutine Documentation

◆ add_jacobian_3d_out()

◆ add_phibar_3d_out()

◆ createg_1d()

◆ createg_1dms()

◆ createg_2d()

◆ createg_2dms()

◆ createg_3d()

◆ createg_3dms()

◆ createg_3dz()

◆ createg_3dzms()

◆ diag3d_on_fluid_moments()

◆ diag3d_spectrum()

◆ diagnose()

◆ fill_buf_array()

◆ fill_buf_pic_array()

◆ fill_buf_pic_scalar()

◆ fill_buf_scalar()

◆ flush0d()

◆ get_3d_parameters()

◆ get_apot()

◆ get_coords()

◆ get_debug_field()

◆ get_ebpot()

◆ get_epot()

◆ get_misc_pot()

◆ get_nebpot()

◆ initialize_diagnostics()

◆ initialize_phasespace_diags()

◆ initialize_source_3d_diags()

◆ mmin_f_serialize()

◆ put3d_dens()

◆ put3d_h5s()

◆ rhs_f_serialize()

◆ velocity_space_diag_init()

◆ write_output()

Variable Documentation

◆ bin_sampling_psi

◆ bin_sampling_v2

◆ buf

◆ buf_pic

◆ chiarr

◆ flux_bin_psi

◆ flux_bin_theta

◆ flux_bin_v

◆ flux_bin_xi

◆ get_pot_disp_saved

◆ hiscp

◆ hiscp_an

◆ hisrz

◆ hisrz_an

◆ hpath

◆ ibuf

◆ ierr

◆ iscp

◆ iscp_an

◆ isrz

◆ isrz_an

◆ line_count

◆ nc

◆ nhistarr

◆ nl_sympl_apar

◆ nph

◆ nr

◆ nr_eq

◆ nz

◆ nz_eq

◆ param3d

◆ phasespace_psi

◆ phasespace_vpar

◆ phasespace_vperp

◆ phi0

◆ phiarr

◆ pot_misc_isp_saved

◆ potcp

◆ potsc

◆ potsp