diagnostics_mod Module Reference

Data Types
interface	fill_buf
interface	fill_buf_pic

Functions/Subroutines
subroutine, public	diagnose (step, step_tot, time)
subroutine	fill_buf_pic_array (fieldin, isp, ioffset)
subroutine	fill_buf_pic_scalar (fieldin, isp, ioffset)
subroutine	fill_buf_array (fieldin, ioffset)
subroutine	fill_buf_scalar (fieldin, ioffset)
subroutine, public	initialize_diagnostics
subroutine	initialize_phasespace_diags
	Initialize phase space diagnostics. More...
subroutine	initialize_source_3d_diags
	Initialize source 3d diagnostics. More...
subroutine, public	velocity_space_diag_init
subroutine	write_output (step, time)
subroutine	createg_3d (name, description, coord1, coord1_name, coord2, coord2_name, coord3, coord3_name)
subroutine	createg_3dz (name, description, coord1, coord1_name, coord2, coord2_name, coord3, coord3_name, mmin_f)
subroutine	createg_2d (name, description, coord1, coord1_name, coord2, coord2_name)
subroutine	createg_1d (name, description, coord1, coord1_name)
subroutine	createg_2dms (name, description, coord1, coord1_name, coord2, coord2_name, isp, fresid_file)
subroutine	createg_3dms (name, description, coord1, coord1_name, coord2, coord2_name, coord3, coord3_name, isp)
subroutine	createg_3dzms (name, description, coord1, coord1_name, coord2, coord2_name, coord3, coord3_name, isp, mmin_f)
subroutine	createg_1dms (name, description, coord1, coord1_name, isp)
subroutine, public	flush0d
subroutine	get_epot (x, y, z, zpot)
subroutine	get_misc_pot (x, y, z, zpot)
subroutine	get_ebpot (x, z, zpot)
subroutine	get_nebpot (x, zpot)
subroutine	get_apot (x, y, z, zpot)
subroutine	get_debug_field (x, y, z, zpot)
subroutine	get_coords (st, chit, phit, xt, yt, zt)
subroutine	get_3d_parameters ()
subroutine	add_jacobian_3d_out (filename)
subroutine	add_phibar_3d_out (filename)
subroutine	diag3d_on_fluid_moments (isp)
subroutine	diag3d_spectrum (field, spectrum_out, nmax)
subroutine	put3d_h5s (time, diag_select, field_select, isp)
subroutine	rhs_f_serialize (rhs_f_ptr)
subroutine	mmin_f_serialize
subroutine	put3d_dens (time, do_moments)

Variables
type(diag3d_parameters)	param3d
integer	nr
integer	nz
integer	nph
integer	nc
integer	nr_eq
integer	nz_eq
character(len=256)	hpath
integer, save	line_count = 0
real, dimension(:), allocatable, save	flux_bin_theta
real, dimension(:), allocatable, save	flux_bin_psi
real, dimension(:), allocatable, save	bin_sampling_psi
real, dimension(:,:), allocatable, save	bin_sampling_v2
real, dimension(:), allocatable, save	phasespace_psi
real, dimension(:, :), allocatable, save	phasespace_vpar
real, dimension(:, :), allocatable, save	phasespace_vperp
real, dimension(:), allocatable, save	source_3d_major_radius
real, dimension(:, :), allocatable, save	source_3d_vpar
real, dimension(:, :), allocatable, save	source_3d_vperp
real, dimension(:,:), allocatable, save	buf
real, dimension(:,:,:), allocatable, save	buf_pic
integer, save	ibuf =0
real, save	phi0 = 0.0
real, dimension(1:nbin_xi), save	flux_bin_xi = 0.0
real, dimension(:,:), allocatable, save	flux_bin_v
real, dimension(:), allocatable, save	rarr_eq
real, dimension(:), allocatable, save	zarr_eq
real, dimension(:), allocatable, save	sarr
real, dimension(:), allocatable, save	phiarr
real, dimension(:), allocatable, save	chiarr
real, dimension(:,:,:), allocatable, save	potsp
real, dimension(:,:,:), allocatable, save	potsc
real, dimension(:,:), allocatable, save	srz
real, dimension(:,:), allocatable, save	rsc
real, dimension(:,:), allocatable, save	zsc
real, dimension(:,:), allocatable, save	psirz
real, dimension(:,:), allocatable, save	isrz
real, dimension(:,:), allocatable, save	hisrz
real, dimension(:,:), allocatable, save	hisrz_an
real, dimension(:,:), allocatable, save	isrz_an
real, dimension(:,:), allocatable, save	iscp
real, dimension(:,:), allocatable, save	hiscp
real, dimension(:,:), allocatable, save	iscp_an
real, dimension(:,:), allocatable, save	hiscp_an
real, dimension(:,:), allocatable, save	potcp
integer	ierr
integer, parameter	nhistarr =16
integer, save	write3dsize
integer, save	pot_misc_isp_saved
integer, save	get_pot_disp_saved
logical, save	nl_sympl_apar = .false.

Function/Subroutine Documentation

add_jacobian_3d_out()

subroutine diagnostics_mod::add_jacobian_3d_out

(

character(len=128), intent(in)

filename

)

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add_phibar_3d_out()

subroutine diagnostics_mod::add_phibar_3d_out

(

character(len=128), intent(in)

filename

)

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createg_1d()

subroutine diagnostics_mod::createg_1d	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real, dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name
	)

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createg_1dms()

subroutine diagnostics_mod::createg_1dms	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real, dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		integer, intent(in)	isp
	)

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createg_2d()

subroutine diagnostics_mod::createg_2d	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real, dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real, dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name
	)

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createg_2dms()

subroutine diagnostics_mod::createg_2dms	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real, dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real, dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name,
		integer, intent(in)	isp,
		integer, intent(in), optional	fresid_file
	)

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createg_3d()

subroutine diagnostics_mod::createg_3d ( character(len=*), intent(in)  name, character(len=*), intent(in)  description, real, dimension(:), intent(in)  coord1, character(len=*), intent(in)  coord1_name, real, dimension(:), intent(in)  coord2, character(len=*), intent(in)  coord2_name, real, dimension(:), intent(in)  coord3, character(len=*), intent(in)  coord3_name  )

private

createg_3dms()

subroutine diagnostics_mod::createg_3dms	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real, dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real, dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name,
		real, dimension(:), intent(in)	coord3,
		character(len=*), intent(in)	coord3_name,
		integer, intent(in)	isp
	)

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createg_3dz()

subroutine diagnostics_mod::createg_3dz	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real, dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real, dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name,
		real, dimension(:), intent(in)	coord3,
		character(len=*), intent(in)	coord3_name,
		integer, dimension(:,:), intent(in), optional	mmin_f
	)

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createg_3dzms()

subroutine diagnostics_mod::createg_3dzms	(	character(len=*), intent(in)	name,
		character(len=*), intent(in)	description,
		real, dimension(:), intent(in)	coord1,
		character(len=*), intent(in)	coord1_name,
		real, dimension(:), intent(in)	coord2,
		character(len=*), intent(in)	coord2_name,
		real, dimension(:), intent(in)	coord3,
		character(len=*), intent(in)	coord3_name,
		integer, intent(in)	isp,
		integer, dimension(:,:), intent(in), optional	mmin_f
	)

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diag3d_on_fluid_moments()

subroutine diagnostics_mod::diag3d_on_fluid_moments

(

integer, intent(in)

isp

)

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diag3d_spectrum()

subroutine diagnostics_mod::diag3d_spectrum	(	real, dimension(:,:,:), intent(in)	field,
		real, dimension(:,:), intent(out)	spectrum_out,
		integer, intent(in)	nmax
	)

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diagnose()

subroutine, public diagnostics_mod::diagnose	(	integer, intent(in)	step,
		integer, intent(in)	step_tot,
		real, intent(in)	time
	)

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fill_buf_array()

subroutine diagnostics_mod::fill_buf_array ( type(diag0d), intent(in)  fieldin, integer, intent(inout)  ioffset  )

private

fill_buf_pic_array()

subroutine diagnostics_mod::fill_buf_pic_array ( type(diag0d), intent(in)  fieldin, integer, intent(in)  isp, integer, intent(inout)  ioffset  )

private

fill_buf_pic_scalar()

subroutine diagnostics_mod::fill_buf_pic_scalar ( real, intent(in)  fieldin, integer, intent(in)  isp, integer, intent(inout)  ioffset  )

private

fill_buf_scalar()

subroutine diagnostics_mod::fill_buf_scalar ( real, intent(in)  fieldin, integer, intent(inout)  ioffset  )

private

flush0d()

subroutine, public diagnostics_mod::flush0d

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get_3d_parameters()

subroutine diagnostics_mod::get_3d_parameters

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get_apot()

subroutine diagnostics_mod::get_apot	(	real, intent(in)	x,
		real, intent(in)	y,
		real, intent(in)	z,
		real, intent(inout)	zpot
	)

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get_coords()

subroutine diagnostics_mod::get_coords ( real, intent(in)  st, real, intent(in)  chit, real, intent(inout)  phit, real, intent(out)  xt, real, intent(out)  yt, real, intent(out)  zt  )

private

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get_debug_field()

subroutine diagnostics_mod::get_debug_field	(	real, intent(in)	x,
		real, intent(in)	y,
		real, intent(in)	z,
		real, intent(inout)	zpot
	)

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get_ebpot()

subroutine diagnostics_mod::get_ebpot	(	real, intent(in)	x,
		real, intent(in)	z,
		real, intent(inout)	zpot
	)

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get_epot()

subroutine diagnostics_mod::get_epot	(	real, intent(in)	x,
		real, intent(in)	y,
		real, intent(in)	z,
		real, intent(inout)	zpot
	)

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get_misc_pot()

subroutine diagnostics_mod::get_misc_pot	(	real, intent(in)	x,
		real, intent(in)	y,
		real, intent(in)	z,
		real, intent(inout)	zpot
	)

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get_nebpot()

subroutine diagnostics_mod::get_nebpot	(	real, intent(in)	x,
		real, intent(inout)	zpot
	)

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initialize_diagnostics()

subroutine, public diagnostics_mod::initialize_diagnostics

Note

Here we already include the kapv parameter as we want to check the loading sampling with limit kapv*vth

Bug:

Not clear why this should only happen on me_world==0. Do the others not use these diagnostics? - ALS

Bug:

Todo:

The subroutine velocity_space_diag_init should probably be removed. path_vel1d, path_vel2d, path_vel3d, and path_vel3d_theta are all never assigned, despite being allocated and written. - ALS

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initialize_phasespace_diags()

subroutine diagnostics_mod::initialize_phasespace_diags

Initialize phase space diagnostics.

Note that this routine must be run after vthmax2 has been initialized

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initialize_source_3d_diags()

subroutine diagnostics_mod::initialize_source_3d_diags

private

Initialize source 3d diagnostics.

Note that this routine must be run after vthmax2 has been initialized

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mmin_f_serialize()

subroutine diagnostics_mod::mmin_f_serialize

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put3d_dens()

subroutine diagnostics_mod::put3d_dens	(	real, intent(in)	time,
		logical, intent(in), optional	do_moments
	)

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put3d_h5s()

subroutine diagnostics_mod::put3d_h5s	(	real, intent(in)	time,
		integer, intent(in)	diag_select,
		integer, intent(in)	field_select,
		integer, intent(in), optional	isp
	)

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rhs_f_serialize()

subroutine diagnostics_mod::rhs_f_serialize

(

complex, dimension(:,:), intent(in), allocatable

rhs_f_ptr

)

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velocity_space_diag_init()

subroutine, public diagnostics_mod::velocity_space_diag_init

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write_output()

subroutine diagnostics_mod::write_output ( integer, intent(in)  step, real, intent(in)  time  )

private

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Variable Documentation

bin_sampling_psi

real, dimension(:), allocatable, save diagnostics_mod::bin_sampling_psi

private

bin_sampling_v2

real, dimension(:,:), allocatable, save diagnostics_mod::bin_sampling_v2

private

buf

real, dimension(:,:), allocatable, save diagnostics_mod::buf

private

buf_pic

real, dimension(:,:,:), allocatable, save diagnostics_mod::buf_pic

private

chiarr

real, dimension(:), allocatable, save diagnostics_mod::chiarr

private

flux_bin_psi

real, dimension(:), allocatable, save diagnostics_mod::flux_bin_psi

private

flux_bin_theta

real, dimension(:), allocatable, save diagnostics_mod::flux_bin_theta

private

flux_bin_v

real, dimension(:,:), allocatable, save diagnostics_mod::flux_bin_v

private

flux_bin_xi

real, dimension(1:nbin_xi ), save diagnostics_mod::flux_bin_xi = 0.0

private

get_pot_disp_saved

integer, save diagnostics_mod::get_pot_disp_saved

private

hiscp

real, dimension(:,:), allocatable, save diagnostics_mod::hiscp

private

hiscp_an

real, dimension(:,:), allocatable, save diagnostics_mod::hiscp_an

private

hisrz

real, dimension(:,:), allocatable, save diagnostics_mod::hisrz

private

hisrz_an

real, dimension(:,:), allocatable, save diagnostics_mod::hisrz_an

private

hpath

character(len=256) diagnostics_mod::hpath

private

ibuf

integer, save diagnostics_mod::ibuf =0

private

ierr

integer diagnostics_mod::ierr

private

iscp

real, dimension(:,:), allocatable, save diagnostics_mod::iscp

private

iscp_an

real, dimension(:,:), allocatable, save diagnostics_mod::iscp_an

private

isrz

real, dimension(:,:), allocatable, save diagnostics_mod::isrz

private

isrz_an

real, dimension(:,:), allocatable, save diagnostics_mod::isrz_an

private

line_count

integer, save diagnostics_mod::line_count = 0

private

nc

integer diagnostics_mod::nc

private

nhistarr

integer, parameter diagnostics_mod::nhistarr =16

private

nl_sympl_apar

logical, save diagnostics_mod::nl_sympl_apar = .false.

private

nph

integer diagnostics_mod::nph

private

nr

integer diagnostics_mod::nr

private

nr_eq

integer diagnostics_mod::nr_eq

private

nz

integer diagnostics_mod::nz

private

nz_eq

integer diagnostics_mod::nz_eq

private

param3d

type(diag3d_parameters) diagnostics_mod::param3d

private

phasespace_psi

real, dimension(:), allocatable, save diagnostics_mod::phasespace_psi

private

phasespace_vpar

real, dimension(:, :), allocatable, save diagnostics_mod::phasespace_vpar

private

phasespace_vperp

real, dimension(:, :), allocatable, save diagnostics_mod::phasespace_vperp

private

phi0

real, save diagnostics_mod::phi0 = 0.0

private

phiarr

real, dimension(:), allocatable, save diagnostics_mod::phiarr

private

pot_misc_isp_saved

integer, save diagnostics_mod::pot_misc_isp_saved

private

potcp

real, dimension(:,:), allocatable, save diagnostics_mod::potcp

private

potsc

real, dimension(:,:,:), allocatable, save diagnostics_mod::potsc

private

potsp

real, dimension(:,:,:), allocatable, save diagnostics_mod::potsp

private

psirz

real, dimension(:,:), allocatable, save diagnostics_mod::psirz

private

rarr_eq

real, dimension(:), allocatable, save diagnostics_mod::rarr_eq

private

rsc

real, dimension(:,:), allocatable, save diagnostics_mod::rsc

private

sarr

real, dimension(:), allocatable, save diagnostics_mod::sarr

private

source_3d_major_radius

real, dimension(:), allocatable, save diagnostics_mod::source_3d_major_radius

private

source_3d_vpar

real, dimension(:, :), allocatable, save diagnostics_mod::source_3d_vpar

private

source_3d_vperp

real, dimension(:, :), allocatable, save diagnostics_mod::source_3d_vperp

private

srz

real, dimension(:,:), allocatable, save diagnostics_mod::srz

private

write3dsize

integer, save diagnostics_mod::write3dsize

private

zarr_eq

real, dimension(:), allocatable, save diagnostics_mod::zarr_eq

private

zsc

real, dimension(:,:), allocatable, save diagnostics_mod::zsc

private